Basic Information
Locus ID:
AH05.3739
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 53994106 | 53996347 | - | AH05.3739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 55,355.91 Da | 73.87 | 49.19 | -1.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 372 | 453 | 9.9E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 372 | 454 | 2.0E-26 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 428 | - | - |
| Coils | Coil | Coil | 378 | 398 | - | - |
| Coils | Coil | Coil | 406 | 429 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 1.66E-54 |
| RefSeq | XP_025808696.1 | DNA ligase 1-like [Panicum hallii] | 1.81E-243 |
| TrEMBL | A0A2T8KLP8 | PAPA-1 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G461000 PE=4 SV=1 | 4.09E-242 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology