Basic Information
Locus ID:
AH05.3665
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 52963137 | 52966687 | + | AH05.3665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 32,325.25 Da | 53.36 | 53.94 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 30 | 106 | 8.2E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 160 | 203 | 1.0E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 208 | 265 | 5.4E-25 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 160 | 210 | 1.36E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 26 | 95 | 3.14E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 97 | 154 | 1.44E-20 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 230 | 1.0E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 232 | 271 | 5.9E-17 | - |
| SMART | SM00184 | ring_2 | 161 | 203 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 23 | 94 | 24.867569 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 96 | 160 | 34.377411 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 204 | 11.913911 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 1.35E-105 |
| RefSeq | XP_025804804.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X2 [Panicum hallii] | 2.12E-182 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 1.3E-104 | |
| TrEMBL | A0A2T7EHM4 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G426100 PE=4 SV=1 | 3.38E-181 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology