halophFGD

Basic Information

Locus ID: AH05.354

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH05	3148016	3153778	-	AH05.354

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.61	129,682.56 Da	53.89	93.16	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	237	270	9.9E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	233	277	2.22E-8	IPR036047
ProSiteProfiles	PS50181	F-box domain profile.	234	284	8.543671	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_004977207.1	uncharacterized protein LOC101770784 [Setaria italica]	6.89E-186
TrEMBL	A0A368S0I4	F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_7G282500v2 PE=4 SV=1	1.56E-184

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	3	AH05.354, AH09.721, CH09.786
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_4AG0319250, gene-QOZ80_4BG0356840 ... gene-QOZ80_5AG0364960, gene-QOZ80_5AG0383920
Poaceae	Hordeum vulgare	18	HORVU.MOREX.r3.1HG0007520.1.CDS1 ... HORVU.MOREX.r3.1HG0016820.1.CDS1, HORVU.MOREX.r3.1HG0016850.1.CDS1, HORVU.MOREX.r3.1HG0045060.1.CDS1, HORVU.MOREX.r3.1HG0049590.1.CDS1, HORVU.MOREX.r3.1HG0080330.1.CDS1, HORVU.MOREX.r3.1HG0080370.1.CDS1, HORVU.MOREX.r3.2HG0130870.1.CDS1, HORVU.MOREX.r3.2HG0161210.1.CDS1, HORVU.MOREX.r3.2HG0184290.1.CDS1, HORVU.MOREX.r3.3HG0276200.1.CDS1, HORVU.MOREX.r3.3HG0276210.1.CDS1, HORVU.MOREX.r3.3HG0278360.1.CDS1, HORVU.MOREX.r3.3HG0314560.1.CDS1, HORVU.MOREX.r3.3HG0314650.1.CDS1, HORVU.MOREX.r3.6HG0626560.1.CDS1, HORVU.MOREX.r3.6HG0626610.1.CDS1, HORVU.MOREX.r3.7HG0664080.1.CDS1
Poaceae	Lolium multiflorum	19	gene-QYE76_000820, gene-QYE76_007611, gene-QYE76_007688 ... gene-QYE76_007689, gene-QYE76_007690, gene-QYE76_007691, gene-QYE76_010407, gene-QYE76_012370, gene-QYE76_014609, gene-QYE76_015959, gene-QYE76_016198, gene-QYE76_016277, gene-QYE76_020296, gene-QYE76_020297, gene-QYE76_020302, gene-QYE76_039853, gene-QYE76_039855, gene-QYE76_040150, gene-QYE76_045199
Poaceae	Oryza coarctata	10	Oco07G003640, Oco08G003820, Oco09G015490, Oco09G015500 ... Oco09G015560, Oco09G015570, Oco10G015370, Oco10G015430, Oco10G015440, Oco10G015450
Poaceae	Oryza sativa	9	LOC_Os04g30750.1, LOC_Os04g30810.1, LOC_Os04g30830.1 ... LOC_Os05g45990.1, LOC_Os05g46300.1, LOC_Os05g46310.1, LOC_Os05g46320.1, LOC_Os05g46380.1, LOC_Os05g46390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G459900, gene-BS78_09G218700
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0102687, Pt_Chr0203147, Pt_Chr0306206, Pt_Chr0503882 ... Pt_Chr0503884, Pt_Chr0504135, Pt_Chr0504136, Pt_Chr0704333, Pt_Chr0704335, Pt_Chr0704337
Poaceae	Sporobolus alterniflorus	2	Chr01G024090, Chr23G014350
Poaceae	Thinopyrum elongatum	11	Tel1E01G079600, Tel1E01G411000, Tel1E01G411400 ... Tel1E01G587900, Tel1E01G588200, Tel2E01G293700, Tel2E01G363700, Tel2E01G501000, Tel2E01G876500, Tel3E01G733700, Tel6E01G664600
Poaceae	Triticum dicoccoides	16	gene_TRIDC1AG052530, gene_TRIDC1BG013270 ... gene_TRIDC1BG028500, gene_TRIDC1BG060110, gene_TRIDC1BG060150, gene_TRIDC1BG061020, gene_TRIDC2AG024320, gene_TRIDC2BG028840, gene_TRIDC2BG056200, gene_TRIDC3BG052080, gene_TRIDC6AG055430, gene_TRIDC6AG055460, gene_TRIDC6AG055470, gene_TRIDC6BG056010, gene_TRIDC6BG065020, gene_TRIDC6BG065070
Poaceae	Triticum aestivum	43	TraesCS1A02G362200.1, TraesCS1A02G362300.1 ... TraesCS1B02G046600.1.cds1, TraesCS1B02G047100.1.cds1, TraesCS1B02G094000.1.cds1, TraesCS1B02G172200.1, TraesCS1B02G259100.1.cds1, TraesCS1B02G373300.1.cds1, TraesCS1B02G373700.1.cds1, TraesCS1B02G379500.1.cds1, TraesCS1B02G408100.1.cds1, TraesCS1D02G042600.1.cds1, TraesCS1D02G153800.1.cds1, TraesCS1D02G247900.1.cds1, TraesCS1D02G361100.1.cds1, TraesCS1D02G361200.1.cds1, TraesCS1D02G367200.1.cds1, TraesCS2A02G189800.1.cds1, TraesCS2A02G279400.1.cds1, TraesCS2A02G368800.1.cds1, TraesCS2A02G516400.1.cds1, TraesCS2B02G297400.1.cds1, TraesCS2B02G386000.1.cds1, TraesCS2D02G278400.1.cds1, TraesCS2D02G365500.1.cds1, TraesCS3A02G243500.1, TraesCS3B02G346800.1.cds1, TraesCS3B02G505200.1.cds1, TraesCS3D02G243400.1.cds1, TraesCS3D02G311200.1, TraesCS3D02G455900.1.cds1, TraesCS4B02G086800.1.cds1, TraesCS4D02G096900.1.cds1, TraesCS5B02G207400.1.cds1, TraesCS6A02G371900.1.cds1, TraesCS6B02G308700.1.cds1, TraesCS6B02G409300.1.cds1, TraesCS6B02G409600.1.cds1, TraesCS6D02G132700.1.cds1, TraesCS6D02G298600.1.cds1, TraesCS6D02G300500.1.cds1, TraesCS6D02G355700.1.cds1, TraesCS7D02G293700.1.cds1