Basic Information
Locus ID:
AH05.3493
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 50050460 | 50063645 | + | AH05.3493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 146,567.20 Da | 47.61 | 76.12 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 195 | 311 | 2.07178E-37 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 336 | 664 | 4.22852E-169 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1025 | 1234 | 1.8E-57 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 338 | 659 | 2.0E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 763 | 1015 | 1.1E-76 | IPR024729 |
| Pfam | PF00917 | MATH domain | 200 | 320 | 1.1E-20 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 333 | 689 | 7.46E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 191 | 326 | 1.96E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 823 | 940 | 5.1E-45 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 941 | 1038 | 9.0E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 335 | 663 | 1.3E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 191 | 334 | 3.1E-53 | IPR008974 |
| SMART | SM00061 | math_3 | 195 | 299 | 2.9E-22 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 338 | 662 | 40.289238 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 193 | 318 | 38.74984 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 339 | 354 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 578 | 595 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 40 | - | - |
| Coils | Coil | Coil | 678 | 698 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_039839440.1 | ubiquitin C-terminal hydrolase 12-like isoform X2 [Panicum virgatum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0UYQ1 | ubiquitinyl hydrolase 1 OS=Panicum virgatum OX=38727 GN=PVAP13_3KG431800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology