halophFGD

Basic Information

Locus ID: AH05.3418

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH05	48449055	48453424	-	AH05.3418

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.90	59,238.26 Da	58.01	66.69	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF117289	Nucleoporin domain	464	554	1.49E-9	-
Gene3D	G3DSA:2.130.10.10	-	441	563	7.3E-30	IPR015943
MobiDBLite	mobidb-lite	consensus disorder prediction	217	232	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	320	347	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	315	347	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	21	41	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	189	249	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03364 (cell division cycle 20-like protein 1, cofactor of APC complex)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G22910.1	FIZZY-related 2.	5.15E-57
RefSeq	XP_039780254.1	protein FIZZY-RELATED 2-like isoform X2 [Panicum virgatum]	6.89E-116
Swiss-Prot	Q8L3Z8	Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=FZR2 PE=1 SV=1	5.01E-56
TrEMBL	A0A8T0P0G4	ANAPC4_WD40 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG543500 PE=3 SV=1	2.59E-114

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	3	AH01.2587, AH01.3856, AH05.3418