HalophFGD

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Basic Information
Locus ID: AH05.3347
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
AH05 46400456 46402090 - AH05.3347
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
11.09 40,787.16 Da 72.30 73.87 -0.40
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 173 224 2.4E-5 IPR036047
MobiDBLite mobidb-lite consensus disorder prediction 256 287 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 21 - -
MobiDBLite mobidb-lite consensus disorder prediction 239 287 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_039839234.1 uncharacterized protein LOC120699338 [Panicum virgatum] 3.73E-51
TrEMBL A0A1E5WFL7 F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0002797 PE=4 SV=1 1.63E-55
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 20 AH02.2246, AH02.2248, AH05.3340, AH05.3346, AH05.3347 ...
AH06.1300, BH02.2347, BH02.2350, BH05.3349, BH05.3350, BH05.3351, BH05.3434, CH02.2522, CH02.2525, CH02.2526, CH02.2527, CH05.3460, CH05.3461, CH05.3564, CH08.1516
Poaceae Eleusine coracana subsp. coracana 18 gene-QOZ80_1AG0020900, gene-QOZ80_1AG0023560 ...
gene-QOZ80_1AG0023570, gene-QOZ80_1BG0070690, gene-QOZ80_1BG0074080, gene-QOZ80_1BG0074090, gene-QOZ80_1BG0074100, gene-QOZ80_5AG0365790, gene-QOZ80_5AG0389100, gene-QOZ80_5BG0413600, gene-QOZ80_5BG0435880, gene-QOZ80_7AG0567930, gene-QOZ80_7BG0599330, gene-QOZ80_8AG0629450, gene-QOZ80_8AG0634690, gene-QOZ80_8BG0657690, gene-QOZ80_8BG0657700, gene-QOZ80_8BG0663660
Poaceae Hordeum vulgare 12 HORVU.MOREX.r3.1HG0055060.1, HORVU.MOREX.r3.1HG0058320.2 ...
HORVU.MOREX.r3.1HG0055150.1.CDS1, HORVU.MOREX.r3.1HG0055160.1.CDS1, HORVU.MOREX.r3.3HG0310240.1.CDS1, HORVU.MOREX.r3.5HG0485260.1.CDS1, HORVU.MOREX.r3.5HG0502080.1, HORVU.MOREX.r3.5HG0522060.1.CDS1, HORVU.MOREX.r3.6HG0565120.1, HORVU.MOREX.r3.6HG0565340.1.CDS1, HORVU.MOREX.r3.6HG0567020.1.CDS1, HORVU.MOREX.r3.7HG0635460.1.CDS1
Poaceae Lolium multiflorum 20 gene-QYE76_001927, gene-QYE76_001928, gene-QYE76_012384 ...
gene-QYE76_012387, gene-QYE76_012390, gene-QYE76_012417, gene-QYE76_012422, gene-QYE76_020647, gene-QYE76_028148, gene-QYE76_053642, gene-QYE76_053651, gene-QYE76_053653, gene-QYE76_053656, gene-QYE76_055607, gene-QYE76_057587, gene-QYE76_057613, gene-QYE76_058545, gene-QYE76_060211, gene-QYE76_060212, gene-QYE76_069599
Poaceae Oryza coarctata 5 Oco01G014050, Oco02G014280, Oco02G014300, Oco03G006450 ...
Oco04G006660
Poaceae Oryza sativa 2 LOC_Os01g41950.1, LOC_Os01g41970.1
Poaceae Paspalum vaginatum 5 gene-BS78_01G373100, gene-BS78_03G170300 ...
gene-BS78_05G083500, gene-BS78_08G105400, gene-BS78_08G105600
Poaceae Puccinellia tenuiflora 4 Pt_Chr0106360, Pt_Chr0601009, Pt_Chr0700515, Pt_Chr0700517
Poaceae Sporobolus alterniflorus 16 Chr02G016050, Chr02G016060, Chr02G016080, Chr05G017780 ...
Chr05G017790, Chr06G015330, Chr06G015340, Chr08G010690, Chr0G001820, Chr17G013060, Chr18G010770, Chr24G007590, Chr24G007600, Chr28G006960, Chr29G006530, Chr29G006550
Poaceae Thinopyrum elongatum 16 Tel1E01G351900, Tel1E01G352200, Tel1E01G374400 ...
Tel3E01G677900, Tel4E01G495400, Tel4E01G627500, Tel5E01G377400, Tel5E01G543300, Tel5E01G543400, Tel5E01G543700, Tel5E01G716300, Tel6E01G152100, Tel6E01G284400, Tel6E01G285000, Tel6E01G294800, Tel7E01G742800
Poaceae Triticum dicoccoides 12 gene_TRIDC1AG033420, gene_TRIDC1BG038760 ...
gene_TRIDC2BG004830, gene_TRIDC4AG001240, gene_TRIDC4BG028860, gene_TRIDC5AG036820, gene_TRIDC5AG064990, gene_TRIDC5AG065000, gene_TRIDC6AG018170, gene_TRIDC6AG019180, gene_TRIDC6BG024040, gene_TRIDC6BG047890
Poaceae Triticum aestivum 61 TraesCS1A02G204400.1, TraesCS1A02G204500.1 ...
TraesCS1A02G221300.1, TraesCS1A02G381900.1.cds1, TraesCS1B02G218000.1, TraesCS1B02G218100.2, TraesCS1B02G218200.1, TraesCS1B02G234600.1, TraesCS1D02G207700.1, TraesCS1D02G207800.1.cds1, TraesCS1D02G207900.1.cds1, TraesCS1D02G222900.1, TraesCS1D02G389600.1.cds1, TraesCS1D02G447800.1, TraesCS2A02G039800.1.cds1, TraesCS2B02G052700.1.cds1, TraesCS2D02G038400.1.cds1, TraesCS3A02G115100.1.cds1, TraesCS3B02G042100.1.cds1, TraesCS3B02G463100.1.cds1, TraesCS3D02G421800.1.cds1, TraesCS4A02G009100.1, TraesCS4A02G484100.1.cds1, TraesCS4B02G388000.1.cds1, TraesCS4B02G389200.1.cds1, TraesCS4B02G389600.1, TraesCS5A02G232300.1.cds1, TraesCS5A02G341800.1, TraesCS5A02G453000.1.cds1, TraesCS5A02G553400.1.cds1, TraesCS5A02G553500.1, TraesCS5B02G230600.1, TraesCS5B02G340500.1, TraesCS5B02G341300.1, TraesCS5B02G462000.1, TraesCS5D02G235700.1, TraesCS5D02G346600.1, TraesCS5D02G346700.1, TraesCS5D02G363200.1, TraesCS5D02G463400.1.cds1, TraesCS5D02G463500.1.cds1, TraesCS5D02G463800.1.cds1, TraesCS6A02G134600.1.cds1, TraesCS6A02G134900.1.cds1, TraesCS6A02G140400.1.cds1, TraesCS6A02G421400.2, TraesCS6B02G163000.1.cds1, TraesCS6B02G168900.1.cds1, TraesCS6B02G445700.1, TraesCS6D02G123800.1.cds1, TraesCS6D02G124100.1.cds1, TraesCS6D02G128500.2.cds1, TraesCS6D02G403600.1, TraesCS7D02G078200.1.cds1, TraesCS7D02G078300.1, TraesCSU02G072300.1.cds1, TraesCSU02G123900.1.cds1, TraesCSU02G124000.1.cds1, TraesCSU02G124100.1.cds1, TraesCSU02G198400.1, TraesCSU02G221300.1
Poaceae Zea mays 2 Zm00001eb042100_P001, Zm00001eb161470_P001
Poaceae Zoysia japonica 3 nbis-gene-12552, nbis-gene-38416, nbis-gene-990
Poaceae Zoysia macrostachya 3 Zma_g25778, Zma_g5174, Zma_g6460
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.