Basic Information
Locus ID:
AH05.3177
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Pex2 / Pex12 amino terminal region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 40515444 | 40535851 | - | AH05.3177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 191,853.27 Da | 46.10 | 72.33 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1458 | 1552 | 7.0E-28 | IPR013103 |
| Pfam | PF00665 | Integrase core domain | 1290 | 1390 | 8.8E-16 | IPR001584 |
| Pfam | PF04757 | Pex2 / Pex12 amino terminal region | 24 | 236 | 2.6E-38 | IPR006845 |
| Pfam | PF00098 | Zinc knuckle | 660 | 676 | 1.4E-4 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 465 | 604 | 7.4E-10 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 642 | 682 | 6.98E-7 | IPR036875 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1291 | 1458 | 1.52E-37 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1459 | 1667 | 1.07E-8 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 1285 | 1467 | 2.8E-39 | IPR036397 |
| Gene3D | G3DSA:4.10.60.10 | - | 655 | 714 | 1.1E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 660 | 676 | 4.5E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 661 | 676 | 9.751616 | IPR001878 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1288 | 1464 | 23.13929 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1622 | 1643 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79810.1 | Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein. Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes. | 1.66E-131 |
| RefSeq | XP_004966968.2 | uncharacterized protein LOC101762853 [Setaria italica] | 1.63E-237 |
| Q9CA86 | Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana OX=3702 GN=PEX2 PE=1 SV=1 | 1.59E-130 | |
| TrEMBL | Q10PG0 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g13260 PE=4 SV=1 | 1.33E-181 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13543, jg27217 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26119 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010886 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g221280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11371, Sbi_jg46323 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20652 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005325 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl13541, Sgl18727, Sgl55809, Sgl61016 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016281, gene:ENSEOMG00000037011 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0011620, CQ.Regalona.r1.9AG0013040 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30124180, pistato.v30124910 |
| Apiaceae | Apium graveolens | 1 | Ag5G00861 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G003880 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716346 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1906.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri8G08678, Ftri8G28883, FtriNA31509 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G79810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018845m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35950.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g051930.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0314 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0333 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12020 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1097s00003.v1.0, Dusal.1097s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g14570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4548, nbisL1-mrna-8129 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.321 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041650 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37398, Lb2G15479 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.3177, BH05.3203 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0400270, gene-QOZ80_5BG0448910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0700750.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032506, gene-QYE76_032515 |
| Poaceae | Oryza coarctata | 2 | Oco10G005600, Oco12G008010 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g19480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G159800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0106762, Pt_Chr0106838, Pt_Chr0601672 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G010620, Chr01G022950, Chr18G005070, Chr22G011950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G525800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042430, gene_TRIDC7BG033570 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G303900.1, TraesCS7B02G204300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb031430_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13257 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7763 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1651, evm.TU.LG22.538 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.558 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27936 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16302 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7971 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.122 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018897 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7366 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21321 |
| Salicaceae | Populus euphratica | 3 | populus_peu02718, populus_peu33624, populus_peu33627 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633377, gene-LOC132645914 |
| Solanaceae | Solanum chilense | 1 | SOLCI001217500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021053 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16759 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1985 |
| Zosteraceae | Zostera marina | 1 | Zosma04g03360.v3.1 |