Basic Information
Locus ID:
AH05.3172
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
metal-nicotianamine transporter YSL6
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 40424619 | 40431561 | + | AH05.3172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.67 | 62,933.47 Da | 66.05 | 61.78 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03169 | OPT oligopeptide transporter protein | 399 | 459 | 1.5E-7 | IPR004813 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 174 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41000.3 | - | 5.37E-36 |
| RefSeq | XP_039772606.1 | probable metal-nicotianamine transporter YSL6 [Panicum virgatum] | 1.1E-42 |
| Q7XRV2 | Probable metal-nicotianamine transporter YSL6 OS=Oryza sativa subsp. japonica OX=39947 GN=YSL6 PE=2 SV=1 | 1.53E-42 | |
| TrEMBL | A0A8T0QCL6 | Metal-nicotianamine transporter YSL6 OS=Panicum virgatum OX=38727 GN=PVAP13_7KG199700 PE=3 SV=1 | 2.05E-41 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 23 | AH03.1339, AH04.1181, AH05.1634, AH05.2682, AH05.3161 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G029890 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g25690.1 |