Basic Information
Locus ID:
AH05.3161
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Rhomboid family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 40184574 | 40193381 | + | AH05.3161 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.31 | 74,136.89 Da | 51.41 | 83.95 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01694 | Rhomboid family | 493 | 554 | 8.4E-16 | IPR022764 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 483 | 554 | 3.01E-15 | IPR035952 |
| Gene3D | G3DSA:1.20.1540.10 | - | 467 | 580 | 7.9E-16 | IPR035952 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 439 | - | - |
| Coils | Coil | Coil | 426 | 446 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53780.1 | RHOMBOID-like protein 4. | 1.44E-26 |
| RefSeq | XP_025827348.1 | RHOMBOID-like protein 1 isoform X2 [Panicum hallii] | 6.26E-38 |
| Q0WQX7 | RHOMBOID-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBL1 PE=2 SV=1 | 1.93E-25 | |
| TrEMBL | A0A811Q8X1 | RHOMBOID-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS36197 PE=3 SV=1 | 2.13E-38 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 23 | AH03.1339, AH04.1181, AH05.1634, AH05.2682, AH05.3161 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G029890 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g25690.1 |