Basic Information
Locus ID:
AH05.2867
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 30960138 | 30961124 | + | AH05.2867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 34,667.67 Da | 67.95 | 78.20 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 83 | 127 | 3.2E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 134 | 1.27E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 133 | 8.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 84 | 127 | 0.0028 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 80 | 136 | 0.0049 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 84 | 127 | 11.353297 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034584563.1 | uncharacterized protein LOC117847453 [Setaria viridis] | 4.77E-173 |
| TrEMBL | A0A4U6VER4 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G286200v2 PE=4 SV=1 | 1.08E-171 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH05.2867 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0424050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0543630.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012963 |
| Poaceae | Oryza coarctata | 1 | Oco10G007370 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g28470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G107400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G010850 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G033600.1.cds1, TraesCS6D02G039100.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb351200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46503 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26658 |