Basic Information
Locus ID:
AH05.2836
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 30302725 | 30305793 | + | AH05.2836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 83,131.27 Da | 49.32 | 77.59 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04195 | Putative gypsy type transposon | 89 | 155 | 1.1E-21 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 554 | - | - |
| Coils | Coil | Coil | 665 | 685 | - | - |
| Coils | Coil | Coil | 587 | 636 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022680442.1 | uncharacterized protein LOC111256491 [Setaria italica] | 8.77E-60 |
| TrEMBL | A0A8T0QA42 | Retrotransposon protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG057036 PE=4 SV=1 | 1.86E-70 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||