Basic Information
Locus ID:
AH05.2796
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 29542082 | 29542684 | - | AH05.2796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 21,145.23 Da | 59.61 | 62.60 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 110 | 153 | 9.60807E-16 | - |
| Pfam | PF13639 | Ring finger domain | 110 | 153 | 1.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 110 | 158 | 8.84E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 161 | 9.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 111 | 152 | 5.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 153 | 11.604098 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 200 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 3.41E-18 |
| RefSeq | XP_025808956.1 | RING-H2 finger protein ATL39-like [Panicum hallii] | 2.45E-76 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 3.36E-17 | |
| TrEMBL | A0A3L6SX01 | RING-H2 finger protein ATL39-like OS=Panicum miliaceum OX=4540 GN=C2845_PM05G22840 PE=4 SV=1 | 1.43E-83 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology