Basic Information
Locus ID:
AH05.2793
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 29489486 | 29490064 | - | AH05.2793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 19,887.43 Da | 49.70 | 83.49 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 119 | 162 | 5.44057E-17 | - |
| Pfam | PF13639 | Ring finger domain | 119 | 162 | 1.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 168 | 5.71E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 168 | 7.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 4.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 12.164712 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 2.08E-17 |
| RefSeq | XP_034584762.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 1.47E-84 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 2.04E-16 | |
| TrEMBL | A0A4U6VE47 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G280000v2 PE=4 SV=1 | 3.33E-83 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology