Basic Information
Locus ID:
AH05.2679
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 27437020 | 27437946 | + | AH05.2679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 28,202.93 Da | 49.11 | 86.59 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 12 | 168 | 5.4E-34 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 11 | 184 | 2.23E-36 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 6 | 145 | 2.8E-31 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 120 | 140 | 2.3E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 29 | 44 | 2.3E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 83 | 97 | 2.3E-8 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002463678.1 | protein synthesis inhibitor II [Sorghum bicolor] | 4.07E-111 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 3.47E-16 | |
| TrEMBL | A0A2T7EEH8 | rRNA N-glycosylase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G291500 PE=3 SV=1 | 1.98E-125 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology