Basic Information
Locus ID:
AH05.259
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 2246851 | 2248146 | + | AH05.259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 44,879.43 Da | 51.76 | 101.74 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 53 | 3.43498E-22 | - |
| Pfam | PF04564 | U-box domain | 11 | 73 | 6.7E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 113 | 409 | 5.89E-7 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 74 | 8.24E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 75 | 1.1E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 10 | 73 | 4.3E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 80 | 33.288136 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 3.3E-63 |
| RefSeq | XP_034602614.1 | E3 ubiquitin-protein ligase PUB23-like [Setaria viridis] | 1.68E-254 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 3.2E-62 | |
| TrEMBL | A0A4U6TZZ0 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_7G307300v2 PE=4 SV=1 | 3.79E-253 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology