Basic Information
Locus ID:
AH05.2580
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein PALE CRESS
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 25954172 | 25957526 | - | AH05.2580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 35,911.42 Da | 57.08 | 82.37 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 248 | 268 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G48120.1 | pale cress protein (PAC). The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist. | 1.8E-102 |
| RefSeq | XP_025809138.1 | protein PALE CRESS, chloroplastic [Panicum hallii] | 3.5E-188 |
| Q39089 | Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV=1 | 1.73E-101 | |
| TrEMBL | A0A2T7EE74 | Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G281800 PE=4 SV=1 | 2.76E-187 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35274 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4446 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006221 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g083850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18958, Sbi_jg37411 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5252 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008166 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl03035, Sgl24897, Sgl30043 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009991, gene:ENSEOMG00000030285 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019140, CQ.Regalona.r1.4BG0011310 |
| Apiaceae | Apium graveolens | 1 | Ag9G02174 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G000960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713861 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2588.V1.1, AsparagusV1_05.627.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G23185 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G48120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001558m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g30040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniS05187g320.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2144 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2258 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04720 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g25030, gene.Thate06g18650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1015 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008124, Pov_00009581 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24830 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2580, BH05.2669, CH05.2759 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0374400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0064290.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013511, gene-QYE76_013704, gene-QYE76_069551 |
| Poaceae | Oryza coarctata | 2 | Oco09G008840, Oco10G008990 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G133800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G008450, Chr22G009200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G407700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037060, gene_TRIDC1BG042030 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G246800.1, TraesCS1B02G257400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb287380_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23751 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28187 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.500, evm.TU.LG22.1518 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.898 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21325 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19912 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18411 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.536, evm.TU.utg000003l.567 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009836, Maker00009958 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1520 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5158 |
| Salicaceae | Populus euphratica | 1 | populus_peu27161 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611064 |
| Solanaceae | Solanum chilense | 1 | SOLCI003897100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031150 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18035_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1972 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32390.v3.1 |