Basic Information
Locus ID:
AH05.2558
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 25507854 | 25510763 | + | AH05.2558 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 38,359.75 Da | 77.99 | 62.27 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 287 | 327 | 1.08526E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 286 | 332 | 1.0E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 333 | 6.31E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 337 | 3.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 288 | 326 | 0.0011 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 288 | 327 | 11.441815 | IPR001841 |
| PRINTS | PR01217 | Proline rich extensin signature | 55 | 67 | 5.9E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 35 | 51 | 5.9E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 16 | 28 | 5.9E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 76 | 97 | 5.9E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 89 | - | - |
| Coils | Coil | Coil | 227 | 247 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 3.36E-86 |
| RefSeq | XP_039838464.1 | probable E3 ubiquitin-protein ligase LUL4 [Panicum virgatum] | 8.81E-170 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 3.24E-85 | |
| TrEMBL | A0A8T0V4E2 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_3KG262561 PE=3 SV=1 | 1.99E-168 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology