Basic Information
Locus ID:
AH05.226
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 1940515 | 1941429 | - | AH05.226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.02 | 34,932.84 Da | 78.59 | 77.40 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 207 | 297 | 8.37E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 189 | 302 | 9.9E-7 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 120 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039802800.1 | putative FBD-associated F-box protein At5g44940 [Panicum virgatum] | 6.82E-88 |
| TrEMBL | A0A8T0U1B0 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG018600 PE=4 SV=1 | 3.24E-76 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_06G006580 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696290, gene-LOC103709871 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3114.V1.1 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.2967, AH02.2968, AH05.224, AH05.225, AH05.226, BH05.254 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5BG0428880, gene-QOZ80_6AG0538570 |
| Poaceae | Oryza coarctata | 2 | Oco02G019100, Oco02G019110 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g51720.1, LOC_Os01g51740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G172600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G022330, Chr06G024100 |
| Poaceae | Zea mays | 1 | Zm00001eb406850_P001 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc04g03080, gene.Posoc04g03090, gene.Posoc04g03100 ... |