Basic Information
Locus ID:
AH05.2178
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 20909619 | 20910254 | - | AH05.2178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.94 | 21,919.78 Da | 60.31 | 85.26 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 150 | 178 | 6.5E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 183 | 6.52E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 184 | 2.8E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 178 | 9.037076 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 107 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10910.1 | RING/U-box superfamily protein. | 7.63E-12 |
| RefSeq | XP_039803454.1 | RING-H2 finger protein ATL79-like [Panicum virgatum] | 1.76E-39 |
| Q9SG96 | RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1 | 7.46E-11 | |
| TrEMBL | A0A1E5WEK8 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0003167 PE=4 SV=1 | 1.43E-43 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH05.2178, AH05.2286, CH05.2391, CH05.2484 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0371710, gene-QOZ80_5BG0419140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0075190.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_014503, gene-QYE76_014504, gene-QYE76_016977 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G010680, Oco10G010700 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g36310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G158800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G010400, Chr22G007240 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G447100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G274500.1.cds1, TraesCS1B02G284000.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14045 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27123 |