Basic Information
Locus ID:
AH05.2114
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 20251489 | 20259807 | + | AH05.2114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 166,552.70 Da | 49.40 | 85.08 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1125 | 1515 | 2.02757E-108 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1172 | 1517 | 9.5E-79 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1119 | 1510 | 1.96E-94 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 169 | 528 | 2.04E-26 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 108 | 534 | 9.0E-35 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1399 | 1515 | 1.3E-34 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1071 | 1289 | 8.7E-39 | - |
| SMART | SM00119 | hect_3 | 1135 | 1517 | 1.0E-94 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1141 | 1517 | 60.520546 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 821 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 847 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 803 | 847 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_004963722.2 | E3 ubiquitin-protein ligase UPL4 [Setaria italica] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | K3Z348 | HECT-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101770654 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology