Basic Information
Locus ID:
AH05.207
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
pre-mRNA-splicing factor cwc-22
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 1805057 | 1819003 | - | AH05.207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 289,189.19 Da | 56.68 | 79.78 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00839 | MPP_PAPs | 246 | 528 | 3.21381E-97 | IPR041792 |
| CDD | cd00063 | FN3 | 153 | 228 | 0.00342976 | IPR003961 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 1522 | 1576 | 7.8E-11 | IPR005174 |
| Pfam | PF10536 | Plant mobile domain | 1694 | 2053 | 1.4E-25 | IPR019557 |
| Pfam | PF00149 | Calcineurin-like phosphoesterase | 249 | 442 | 7.2E-18 | IPR004843 |
| Pfam | PF14008 | Iron/zinc purple acid phosphatase-like protein C | 457 | 522 | 1.8E-14 | IPR025733 |
| Pfam | PF16656 | Purple acid Phosphatase, N-terminal domain | 153 | 234 | 6.2E-21 | IPR015914 |
| SUPERFAMILY | SSF49363 | Purple acid phosphatase, N-terminal domain | 137 | 242 | 1.96E-30 | IPR008963 |
| SUPERFAMILY | SSF81383 | F-box domain | 1014 | 1073 | 5.89E-6 | IPR036047 |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 247 | 516 | 4.88E-53 | IPR029052 |
| Gene3D | G3DSA:2.60.40.380 | - | 152 | 243 | 1.3E-27 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1028 | 1066 | 4.8E-5 | - |
| Gene3D | G3DSA:3.60.21.10 | - | 244 | 534 | 7.4E-99 | IPR029052 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2227 | 2251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2227 | 2249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 957 | - | - |
| Coils | Coil | Coil | 2443 | 2470 | - | - |
| Coils | Coil | Coil | 2387 | 2435 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52820.1 | purple acid phosphatase 22. | 8.41E-176 |
| RefSeq | XP_034605666.1 | purple acid phosphatase 22-like isoform X1 [Setaria viridis] | 0 |
| Q8S340 | Purple acid phosphatase 22 OS=Arabidopsis thaliana OX=3702 GN=PAP22 PE=2 SV=1 | 8.08E-175 | |
| TrEMBL | A0A4U6U3D0 | Purple acid phosphatase OS=Setaria viridis OX=4556 GN=SEVIR_7G334000v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||