Basic Information
Locus ID:
AH05.192
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 1678122 | 1683090 | + | AH05.192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 125,093.29 Da | 48.94 | 73.40 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 167 | 211 | 5.17325E-19 | - |
| Pfam | PF17123 | RING-like zinc finger | 167 | 196 | 9.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 217 | 4.8E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 217 | 1.7E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 167 | 210 | 5.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 211 | 11.604098 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 851 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1036 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24870.1 | RING/U-box superfamily protein. | 8.16E-6 |
| RefSeq | XP_039840494.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Panicum virgatum] | 6.39E-51 |
| Q66HG0 | E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus OX=10116 GN=Rnf13 PE=2 SV=1 | 9.51E-7 | |
| TrEMBL | A0A3L6RDA6 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G13570 PE=4 SV=1 | 4.33E-58 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||