Basic Information
Locus ID:
AH05.173
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 1545823 | 1546449 | - | AH05.173 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.35 | 23,706.48 Da | 85.11 | 55.38 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 108 | 150 | 2.54374E-19 | - |
| Pfam | PF13639 | Ring finger domain | 108 | 150 | 1.3E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 108 | 157 | 9.98E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 166 | 1.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 109 | 149 | 1.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 150 | 13.13841 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 189 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49230.1 | RING/U-box superfamily protein. | 4.98E-13 |
| RefSeq | XP_025809875.1 | E3 ubiquitin-protein ligase ATL42-like [Panicum hallii] | 3.71E-47 |
| Q6NQG7 | RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1 | 4.89E-12 | |
| TrEMBL | A0A835C0C1 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_030349 PE=4 SV=1 | 1.34E-53 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||