Basic Information
Locus ID:
AH05.1634
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 15209432 | 15218043 | + | AH05.1634 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 67,210.72 Da | 47.70 | 77.94 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 107 | 1.31E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 175 | 7.4E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 28 | 67 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 65.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 380 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34260.1 | transducin family protein / WD-40 repeat family protein. | 6.72E-30 |
| RefSeq | XP_004961413.1 | WD repeat-containing protein 55 [Setaria italica] | 5.62E-76 |
| O80775 | WD repeat-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=WDR55 PE=1 SV=2 | 6.56E-29 | |
| TrEMBL | K3Z7F3 | WD repeat-containing protein 55 OS=Setaria italica OX=4555 GN=101784678 PE=3 SV=1 | 1.27E-74 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 23 | AH03.1339, AH04.1181, AH05.1634, AH05.2682, AH05.3161 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G029890 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g25690.1 |