Basic Information
Locus ID:
AH05.1492
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 13639157 | 13646711 | + | AH05.1492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 132,762.55 Da | 49.35 | 74.86 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 40 | 171 | 3.26041E-28 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1058 | 1101 | 1.31571E-18 | - |
| CDD | cd12108 | Hr-like | 591 | 747 | 6.62413E-26 | - |
| CDD | cd12108 | Hr-like | 298 | 426 | 5.5983E-17 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 589 | 748 | 1.9E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 295 | 428 | 1.0E-7 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 930 | 1005 | 3.1E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 43 | 173 | 3.4E-13 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1106 | 1163 | 1.0E-22 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1057 | 1105 | 6.0E-6 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 921 | 986 | 1.7E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 996 | 1051 | 2.48E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 587 | 804 | 7.4E-25 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 35 | 191 | 1.1E-33 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1130 | 1171 | 3.9E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1052 | 1102 | 1.4E-7 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 297 | 444 | 6.7E-19 | - |
| SMART | SM00184 | ring_2 | 1059 | 1100 | 3.4E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 923 | 992 | 25.929523 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1059 | 1100 | 10.851695 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 995 | 1058 | 29.946346 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 838 | - | - |
| Coils | Coil | Coil | 304 | 324 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_039799962.1 | zinc finger protein BRUTUS-like [Panicum virgatum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0U9M2 | Zinc finger protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG183192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology