Basic Information
Locus ID:
AH05.1224
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 11389240 | 11394066 | + | AH05.1224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 92,847.13 Da | 42.90 | 85.36 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 537 | 670 | 7.25965E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 539 | 669 | 2.0E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 692 | 735 | 3.5E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 499 | 737 | 1.96E-59 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 121 | 380 | 8.44E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 498 | 670 | 4.7E-96 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 671 | 746 | 4.7E-96 | - |
| SMART | SM00382 | AAA_5 | 535 | 672 | 2.9E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 642 | 661 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 789 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 231 | - | - |
| Coils | Coil | Coil | 722 | 750 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004961073.1 | putative cell division cycle ATPase [Setaria italica] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 1.58E-65 | |
| TrEMBL | K3Z3U6 | AAA domain-containing protein OS=Setaria italica OX=4555 GN=101785471 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology