Basic Information
Locus ID:
AH05.1020
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 9163140 | 9165628 | - | AH05.1020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.43 | 21,168.72 Da | 46.30 | 84.57 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 2 | 188 | 9.5E-95 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 20 | 140 | 1.44E-26 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 1 | 188 | 1.4E-99 | - |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 50 | 67 | - | IPR021132 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05590.1 | ribosomal protein L18. Encodes cytoplasmic ribosomal protein L18. | 3.14E-107 |
| RefSeq | XP_025805814.1 | 60S ribosomal protein L18-2-like [Panicum hallii] | 2.46E-126 |
| P42791 | Large ribosomal subunit protein eL18y OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2 | 3.02E-106 | |
| TrEMBL | A0A2T7E8F0 | Ribosomal_L18e/L15P domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G117700 PE=3 SV=1 | 9.61E-126 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology