halophFGD

Basic Information

Locus ID: AH04.970

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: synthase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH04	15100228	15105312	+	AH04.970

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.20	129,218.20 Da	43.71	72.00	-0.66

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03732	Retrotransposon gag protein	807	897	3.6E-15	IPR005162
Pfam	PF03936	Terpene synthase family, metal binding domain	330	372	4.9E-13	IPR005630
Pfam	PF01397	Terpene synthase, N-terminal domain	145	299	6.6E-44	IPR001906
SUPERFAMILY	SSF48239	Terpenoid cyclases/Protein prenyltransferases	144	322	1.26E-52	IPR008930
SUPERFAMILY	SSF48576	Terpenoid synthases	325	378	1.44E-12	IPR008949
Gene3D	G3DSA:1.50.10.130	-	167	325	8.4E-69	IPR036965
Gene3D	G3DSA:1.10.600.10	Farnesyl Diphosphate Synthase	148	371	8.4E-69	IPR008949
MobiDBLite	mobidb-lite	consensus disorder prediction	1087	1143	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1119	1143	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	97	-	-
Coils	Coil	Coil	461	481	-	-

Gene Ontology

Molecular Function:

KEGG Pathway

KO Term:

K14184 (alpha-humulene/beta-caryophyllene synthase [EC:4.2.3.104 4.2.3.57])

Pathway:

ko00909 (Sesquiterpenoid and triterpenoid biosynthesis) map00909 (Sesquiterpenoid and triterpenoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R08373 (trans,trans-Farnesyl diphosphate <=> Humulene + Diphosphate) R08541 (trans,trans-Farnesyl diphosphate <=> beta-Caryophyllene + Diphosphate)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G16740.3	-	4.88E-35
RefSeq	XP_034603105.1	tau-cadinol synthase-like isoform X2 [Setaria viridis]	1.53E-91
Swiss-Prot	Q5GJ59	Tau-cadinol synthase OS=Zea mays OX=4577 GN=TPS7 PE=1 SV=1	1.19E-63
TrEMBL	A0A4U1CTW9	Retrotrans_gag domain-containing protein (Fragment) OS=Robertmurraya kyonggiensis OX=1037680 GN=FA727_23640 PE=4 SV=1	5.0E-129

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	10	AH01.1644, AH03.1629, AH04.970, AH04.971, AH05.1660 ... AH07.3665, BH02.1697, BH04.1183, CH01.1931, CH04.980