Basic Information
Locus ID:
AH04.93
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 804502 | 807769 | - | AH04.93 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 84,410.58 Da | 58.41 | 78.98 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00018 | AP2 | 620 | 679 | 9.73638E-31 | IPR001471 |
| Pfam | PF03000 | NPH3 family | 174 | 422 | 8.2E-64 | IPR027356 |
| Pfam | PF00847 | AP2 domain | 621 | 669 | 2.6E-13 | IPR001471 |
| SUPERFAMILY | SSF54695 | POZ domain | 9 | 105 | 4.39E-10 | IPR011333 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 620 | 679 | 3.2E-21 | IPR016177 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 5 | 118 | 6.5E-8 | IPR011333 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 619 | 679 | 8.4E-27 | IPR036955 |
| SMART | SM00380 | rav1_2 | 620 | 683 | 6.4E-40 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 620 | 677 | 23.524981 | IPR001471 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 173 | 447 | 62.793835 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 17 | 88 | 9.227218 | IPR000210 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 643 | 659 | 1.2E-9 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 621 | 632 | 1.2E-9 | IPR001471 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 598 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30520.1 | Phototropic-responsive NPH3 family protein. light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis | 7.07E-129 |
| RefSeq | XP_025828209.1 | root phototropism protein 2-like [Panicum hallii] | 7.96E-311 |
| Q682S0 | Root phototropism protein 2 OS=Arabidopsis thaliana OX=3702 GN=RPT2 PE=1 SV=2 | 6.82E-128 | |
| TrEMBL | A0A2T7CJF9 | NPH3 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G012100 PE=3 SV=1 | 9.4799999999985E-312 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16724, jg35705, jg38066 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23353, gene_7996 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034154, Ah034155 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109820 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg20660, Sbi_jg20662, Sbi_jg23092 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16955, Seu_jg16956 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009227 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63407, Sgl67886 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017916, gene:ENSEOMG00000018283 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012510, CQ.Regalona.r1.2BG0014150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30131750 |
| Apiaceae | Apium graveolens | 1 | Ag2G01241 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G004790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716684 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1526.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G22113, Ftri9G33387 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g019570.2N, BniB08g019010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2461 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2700, Cgl08G2703 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11760 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g29700 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.522, evm.TU.LG01.523 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025533 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16590 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.93, AH05.23, AH05.3672, BH02.2753, BH04.100, BH05.46 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672670, gene-QOZ80_9BG0696280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0353070.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065064 |
| Poaceae | Oryza coarctata | 2 | Oco23G000130, Oco23G000610 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g02610.1, LOC_Os12g02530.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G017000, gene-BS78_08G017000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103781 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G016170, Chr31G006700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G194100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG030820, gene_TRIDC4BG019030 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G192900.1, TraesCS4B02G122300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb093890_P001, Zm00001eb405820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25786 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24643 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.144, evm.TU.LG15.20 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.704 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24875 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3355, nbisL1-mrna-3356 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19110, nbisL1-mrna-19111 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.144 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-146 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10403 |
| Salicaceae | Populus euphratica | 2 | populus_peu14523, populus_peu17030 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643960 |
| Solanaceae | Solanum chilense | 1 | SOLCI006183900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026001 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32235_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1399 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17390.v3.1 |