Basic Information
Locus ID:
AH04.926
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 14200410 | 14206865 | - | AH04.926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 103,356.38 Da | 32.04 | 93.34 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 1 | 136 | 2.61083E-59 | - |
| CDD | cd09279 | RNase_HI_like | 323 | 410 | 1.6746E-26 | - |
| Pfam | PF13456 | Reverse transcriptase-like | 327 | 404 | 1.6E-12 | IPR002156 |
| Pfam | PF00069 | Protein kinase domain | 641 | 838 | 2.3E-43 | IPR000719 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 201 | 269 | 1.7E-16 | IPR041577 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 9 | 136 | 4.4E-18 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1 | 289 | 2.67E-81 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 419 | 488 | 7.78E-10 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 322 | 409 | 3.04E-14 | IPR012337 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 620 | 876 | 3.24E-72 | IPR011009 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 27 | 61 | 2.2E-35 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 324 | 501 | 1.1E-17 | IPR036397 |
| Gene3D | G3DSA:3.10.20.370 | - | 230 | 280 | 1.6E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 714 | 897 | 3.4E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 609 | 713 | 1.2E-32 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 146 | 229 | 6.1E-21 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1 | 136 | 2.2E-35 | IPR043128 |
| SMART | SM00220 | serkin_6 | 638 | 894 | 3.7E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 638 | 919 | 36.329338 | IPR000719 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1 | 136 | 8.527134 | IPR000477 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 319 | 502 | 11.56822 | IPR002156 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 760 | 772 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 644 | 666 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16670.1 | Protein kinase superfamily protein. | 6.27E-118 |
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 7.08E-192 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 6.03E-117 | |
| TrEMBL | Q7XMR7 | OSJNBa0029L02.20 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0029L02.20 PE=4 SV=1 | 3.56E-233 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology