Basic Information
Locus ID:
AH04.860
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SMP-30/Gluconolaconase/LRE-like region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 12772217 | 12773936 | - | AH04.860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 31,318.05 Da | 35.36 | 79.48 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.120.10.30 | - | 38 | 142 | 1.4E-24 | IPR011042 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 167 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57030.1 | Calcium-dependent phosphotriesterase superfamily protein. | 4.54E-23 |
| RefSeq | XP_004984421.1 | protein STRICTOSIDINE SYNTHASE-LIKE 10 [Setaria italica] | 1.45E-52 |
| Q4V3D9 | Protein STRICTOSIDINE SYNTHASE-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=SSL10 PE=2 SV=1 | 4.46E-22 | |
| TrEMBL | A0A4U6T7P0 | Str_synth domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G412100v2 PE=3 SV=1 | 8.33E-52 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 9 | AH01.1897, AH04.860, AH07.1629, BH04.533, BH04.967, BH07.812 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G009010, Oco05G016430, Oco09G004560, Oco10G016000 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os06g28030.1 |
| Poaceae | Sporobolus alterniflorus | 13 | Chr02G009070, Chr06G027180, Chr06G027640, Chr08G004160 ... |
| Poaceae | Zea mays | 1 | Zm00001eb262950_P001 |