Basic Information
Locus ID:
AH04.789
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 11274226 | 11275836 | + | AH04.789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 56,853.55 Da | 36.93 | 85.30 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 61 | 220 | 4.6E-17 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 402 | 468 | 2.6E-10 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 57 | 230 | 4.45E-28 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 61 | 233 | 7.3E-37 | IPR036465 |
| SMART | SM00327 | VWA_4 | 59 | 230 | 7.4E-21 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 61 | 231 | 17.578833 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 480 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 2.63E-38 |
| RefSeq | XP_025828708.1 | uncharacterized protein LOC112903696 [Panicum hallii] | 5.13E-269 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 1.89E-15 | |
| TrEMBL | A0A3L6PJQ0 | VWFA domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM18G07170 PE=4 SV=1 | 2.67E-266 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology