Basic Information
Locus ID:
AH04.771
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 10766993 | 10769186 | - | AH04.771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 30,041.01 Da | 54.57 | 78.55 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 170 | 267 | 8.9E-20 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 172 | 268 | 3.56E-25 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 151 | 268 | 3.4E-27 | - |
| SMART | SM00220 | serkin_6 | 64 | 268 | 1.3E-4 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 268 | 14.562981 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17290.1 | Calcium-dependent protein kinase family protein. Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family. | 2.52E-38 |
| RefSeq | XP_004983799.1 | calcium-dependent protein kinase 23 [Setaria italica] | 4.13E-53 |
| P53682 | Calcium-dependent protein kinase 23 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK23 PE=1 SV=2 | 2.36E-41 | |
| TrEMBL | K4A888 | Calcium-dependent protein kinase 24 OS=Setaria italica OX=4555 GN=101774986 PE=4 SV=1 | 9.33E-52 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH04.771, Contig192.148 |
| Poaceae | Oryza coarctata | 1 | Oco02G011660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G606800 |