halophFGD

Basic Information

Locus ID: AH04.75

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Short Name: SNRNP200

Description: Sec63 Brl domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH04	642670	643463	-	AH04.75

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.29	27,001.93 Da	61.82	72.27	-0.80

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF18149	N-terminal helicase PWI domain	111	227	1.3E-30	IPR041094
MobiDBLite	mobidb-lite	consensus disorder prediction	26	84	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	27	51	-	-

KEGG Pathway

KO Term:

K12854 (pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6])

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G20960.1	U5 small nuclear ribonucleoprotein helicase, putative.	2.44E-23
RefSeq	XP_012703060.1	DExH-box ATP-dependent RNA helicase DExH12 [Setaria italica]	3.77E-34
Swiss-Prot	Q9SYP1	DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1	2.43E-22
TrEMBL	K3YP71	DExH-box ATP-dependent RNA helicase DExH12 OS=Setaria italica OX=4555 GN=101772985 PE=4 SV=1	8.52E-33

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	AH04.75, BH04.80