Basic Information
Locus ID:
AH04.71
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 630366 | 630815 | + | AH04.71 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 16,548.96 Da | 53.52 | 86.51 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 83 | 127 | 2.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 136 | 5.65E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 131 | 3.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 84 | 126 | 8.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 84 | 127 | 12.592549 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10910.1 | RING/U-box superfamily protein. | 2.79E-10 |
| RefSeq | XP_025805398.1 | RING-H2 finger protein ATL56-like [Panicum hallii] | 3.62E-42 |
| Q9SG96 | RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1 | 2.74E-9 | |
| TrEMBL | A0A368S3E2 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G014300v2 PE=4 SV=1 | 9.36E-52 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.71, CH04.137, CH05.56 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672430, gene-QOZ80_9BG0696010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0464570.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003591 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g02220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G012300, gene-BS78_08G020300 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G022220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G258000 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G147900.1.cds1, TraesCS5D02G144900.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb195260_P001 |