Basic Information
Locus ID:
AH04.673
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 8749728 | 8751421 | - | AH04.673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 43,714.38 Da | 46.16 | 76.76 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 318 | 390 | 1.1E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 311 | 394 | 3.36E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 304 | 397 | 1.9E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 317 | 392 | 5.5E-21 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 316 | 396 | 17.387012 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 1.11E-16 |
| RefSeq | XP_034569764.1 | uncharacterized protein LOC117834253 [Setaria viridis] | 1.42E-85 |
| P19682 | 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 4.24E-16 | |
| TrEMBL | K3ZM36 | RRM domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 7.58E-86 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology