halophFGD

Basic Information

Locus ID: AH04.667

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: RNA recognition motif

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH04	8623862	8625741	-	AH04.667

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.98	53,480.99 Da	49.69	76.88	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03478	Protein of unknown function (DUF295)	310	362	3.1E-7	IPR005174

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_034569764.1	uncharacterized protein LOC117834253 [Setaria viridis]	5.85E-110
TrEMBL	K3ZM36	RRM domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1	8.62E-110

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	23	AH01.3923, AH03.1073, AH03.1075, AH04.664, AH04.667 ... AH04.673, AH05.433, AH08.2195, BH01.1079, BH01.4257, BH01.4266, BH03.1240, BH04.703, BH05.487, CH01.4555, CH03.1375, CH04.706, CH04.707, CH04.715, CH05.554, CH05.555, CH05.556, Contig1604.2
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_6AG0525670, gene-QOZ80_6AG0525690 ... gene-QOZ80_6BG0479360, gene-QOZ80_8BG0667130, gene-QOZ80_8BG0667150, gene-QOZ80_9AG0676410, gene-QOZ80_9AG0676960, gene-QOZ80_9BG0700250, gene-QOZ80_9BG0700280, gene-QOZ80_9BG0700680, gene-QOZ80_9BG0700710
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0085110.1, HORVU.MOREX.r3.3HG0321190.1 ... HORVU.MOREX.r3.3HG0328390.1.CDS1, HORVU.MOREX.r3.3HG0328450.1, HORVU.MOREX.r3.5HG0507210.1.CDS1
Poaceae	Lolium multiflorum	15	gene-QYE76_000985, gene-QYE76_006996, gene-QYE76_007069 ... gene-QYE76_041449, gene-QYE76_041477, gene-QYE76_044950, gene-QYE76_045255, gene-QYE76_056700, gene-QYE76_058336, gene-QYE76_058454, gene-QYE76_058766, gene-QYE76_059072, gene-QYE76_059073, gene-QYE76_059076, gene-QYE76_059078
Poaceae	Oryza coarctata	4	Oco04G007650, Oco15G009840, Oco15G009850, Oco18G011940
Poaceae	Oryza sativa	5	LOC_Os02g16740.1, LOC_Os02g16760.1, LOC_Os02g16770.1 ... LOC_Os09g39050.1, LOC_Os09g39190.1
Poaceae	Paspalum vaginatum	10	gene-BS78_03G190000, gene-BS78_03G190200, gene-BS78_K233200 ... gene-BS78_05G100500, gene-BS78_05G102600, gene-BS78_05G102700, gene-BS78_05G107600, gene-BS78_K233300, gene-BS78_K241800, gene-BS78_K242000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0600882, Pt_Chr0601124, Pt_Chr0700603, Pt_Chr0700604
Poaceae	Sporobolus alterniflorus	2	Chr07G019720, Chr10G005970
Poaceae	Thinopyrum elongatum	6	Tel2E01G813100, Tel3E01G890600, Tel3E01G891300 ... Tel5E01G587900, Tel6E01G049100, Tel6E01G631000
Poaceae	Triticum dicoccoides	14	gene_TRIDC3AG074560, gene_TRIDC3AG074600 ... gene_TRIDC3AG074640, gene_TRIDC3BG060290, gene_TRIDC3BG084130, gene_TRIDC3BG085890, gene_TRIDC5AG052470, gene_TRIDC5BG057870, gene_TRIDC5BG057930, gene_TRIDC5BG067420, gene_TRIDC5BG067460, gene_TRIDC6AG059260, gene_TRIDC6BG002100, gene_TRIDC7BG076510
Poaceae	Triticum aestivum	25	TraesCS2A02G006600.1.cds1, TraesCS2B02G506800.1.cds1 ... TraesCS2B02G506900.1, TraesCS2D02G009300.1.cds1, TraesCS3B02G594900.1, TraesCS3B02G595000.1.cds1, TraesCS3B02G596100.1, TraesCS3D02G532200.1.cds1, TraesCS3D02G545400.1.cds1, TraesCS5A02G358800.1, TraesCS5B02G369700.1.cds1, TraesCS5B02G371000.1, TraesCS5D02G367800.1, TraesCS5D02G367900.1, TraesCS5D02G377500.1.cds1, TraesCS5D02G445700.1, TraesCS6A02G012200.1, TraesCS6B02G018600.1, TraesCS7A02G562200.1.cds1, TraesCS7B02G500500.1.cds1, TraesCS7D02G512300.1.cds1, TraesCS7D02G512400.1.cds1, TraesCSU02G055500.1, TraesCSU02G218400.1, TraesCSU02G221200.1
Poaceae	Zoysia japonica	4	nbis-gene-27273, nbis-gene-41884, nbis-gene-49136 ... nbis-gene-54856
Poaceae	Zoysia macrostachya	3	Zma_g18560, Zma_g19347, Zma_g8005
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g32710
Tamaricaceae	Tamarix chinensis	1	TC12G1151