HalophFGD

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Basic Information
Locus ID: AH04.664
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: RNA recognition motif
Maps and Mapping Data
Chromosome Start End Strand ID
AH04 8577457 8579547 - AH04.664
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
10.14 26,384.61 Da 60.95 64.07 -0.60
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
MobiDBLite mobidb-lite consensus disorder prediction 106 152 - -
Best hit
Source Best Hit ID Description E-value
RefSeq XP_051222265.1 uncharacterized protein LOC127340566 [Lolium perenne] 6.82E-7
TrEMBL A0A5J9US16 RRM domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_28919 PE=4 SV=1 1.85E-11
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 23 AH01.3923, AH03.1073, AH03.1075, AH04.664, AH04.667 ...
AH04.673, AH05.433, AH08.2195, BH01.1079, BH01.4257, BH01.4266, BH03.1240, BH04.703, BH05.487, CH01.4555, CH03.1375, CH04.706, CH04.707, CH04.715, CH05.554, CH05.555, CH05.556, Contig1604.2
Poaceae Eleusine coracana subsp. coracana 11 gene-QOZ80_6AG0525670, gene-QOZ80_6AG0525690 ...
gene-QOZ80_6BG0479360, gene-QOZ80_8BG0667130, gene-QOZ80_8BG0667150, gene-QOZ80_9AG0676410, gene-QOZ80_9AG0676960, gene-QOZ80_9BG0700250, gene-QOZ80_9BG0700280, gene-QOZ80_9BG0700680, gene-QOZ80_9BG0700710
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.1HG0085110.1, HORVU.MOREX.r3.3HG0321190.1 ...
HORVU.MOREX.r3.3HG0328390.1.CDS1, HORVU.MOREX.r3.3HG0328450.1, HORVU.MOREX.r3.5HG0507210.1.CDS1
Poaceae Lolium multiflorum 15 gene-QYE76_000985, gene-QYE76_006996, gene-QYE76_007069 ...
gene-QYE76_041449, gene-QYE76_041477, gene-QYE76_044950, gene-QYE76_045255, gene-QYE76_056700, gene-QYE76_058336, gene-QYE76_058454, gene-QYE76_058766, gene-QYE76_059072, gene-QYE76_059073, gene-QYE76_059076, gene-QYE76_059078
Poaceae Oryza coarctata 4 Oco04G007650, Oco15G009840, Oco15G009850, Oco18G011940
Poaceae Oryza sativa 5 LOC_Os02g16740.1, LOC_Os02g16760.1, LOC_Os02g16770.1 ...
LOC_Os09g39050.1, LOC_Os09g39190.1
Poaceae Paspalum vaginatum 10 gene-BS78_03G190000, gene-BS78_03G190200, gene-BS78_K233200 ...
gene-BS78_05G100500, gene-BS78_05G102600, gene-BS78_05G102700, gene-BS78_05G107600, gene-BS78_K233300, gene-BS78_K241800, gene-BS78_K242000
Poaceae Puccinellia tenuiflora 4 Pt_Chr0600882, Pt_Chr0601124, Pt_Chr0700603, Pt_Chr0700604
Poaceae Sporobolus alterniflorus 2 Chr07G019720, Chr10G005970
Poaceae Thinopyrum elongatum 6 Tel2E01G813100, Tel3E01G890600, Tel3E01G891300 ...
Tel5E01G587900, Tel6E01G049100, Tel6E01G631000
Poaceae Triticum dicoccoides 14 gene_TRIDC3AG074560, gene_TRIDC3AG074600 ...
gene_TRIDC3AG074640, gene_TRIDC3BG060290, gene_TRIDC3BG084130, gene_TRIDC3BG085890, gene_TRIDC5AG052470, gene_TRIDC5BG057870, gene_TRIDC5BG057930, gene_TRIDC5BG067420, gene_TRIDC5BG067460, gene_TRIDC6AG059260, gene_TRIDC6BG002100, gene_TRIDC7BG076510
Poaceae Triticum aestivum 25 TraesCS2A02G006600.1.cds1, TraesCS2B02G506800.1.cds1 ...
TraesCS2B02G506900.1, TraesCS2D02G009300.1.cds1, TraesCS3B02G594900.1, TraesCS3B02G595000.1.cds1, TraesCS3B02G596100.1, TraesCS3D02G532200.1.cds1, TraesCS3D02G545400.1.cds1, TraesCS5A02G358800.1, TraesCS5B02G369700.1.cds1, TraesCS5B02G371000.1, TraesCS5D02G367800.1, TraesCS5D02G367900.1, TraesCS5D02G377500.1.cds1, TraesCS5D02G445700.1, TraesCS6A02G012200.1, TraesCS6B02G018600.1, TraesCS7A02G562200.1.cds1, TraesCS7B02G500500.1.cds1, TraesCS7D02G512300.1.cds1, TraesCS7D02G512400.1.cds1, TraesCSU02G055500.1, TraesCSU02G218400.1, TraesCSU02G221200.1
Poaceae Zoysia japonica 4 nbis-gene-27273, nbis-gene-41884, nbis-gene-49136 ...
nbis-gene-54856
Poaceae Zoysia macrostachya 3 Zma_g18560, Zma_g19347, Zma_g8005
Posidoniaceae Posidonia oceanica 1 gene.Posoc02g32710
Tamaricaceae Tamarix chinensis 1 TC12G1151
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.