halophFGD

Basic Information

Locus ID: AH04.493

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Short Name: PTP1

Description: Protein tyrosine phosphatase, catalytic domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH04	5678831	5697599	-	AH04.493

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.43	218,435.11 Da	70.46	66.03	-0.68

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00102	Protein-tyrosine phosphatase	1754	1979	5.7E-68	IPR000242
SUPERFAMILY	SSF52799	(Phosphotyrosine protein) phosphatases II	1708	1986	4.53E-80	IPR029021
Gene3D	G3DSA:3.90.190.10	Protein tyrosine phosphatase superfamily	1701	1991	1.1E-86	IPR029021
SMART	SM00404	ptp_7	1880	1981	5.8E-32	IPR003595
SMART	SM00194	PTPc_3	1727	1984	1.8E-90	IPR000242
ProSiteProfiles	PS50055	PTP type protein phosphatase domain profile.	1728	1982	46.839252	IPR000242
ProSiteProfiles	PS50056	Tyrosine specific protein phosphatases domain profile.	1902	1973	18.92448	IPR000387
PRINTS	PR00700	Protein tyrosine phosphatase signature	1797	1817	1.2E-31	IPR000242
PRINTS	PR00700	Protein tyrosine phosphatase signature	1949	1964	1.2E-31	IPR000242
PRINTS	PR00700	Protein tyrosine phosphatase signature	1879	1896	1.2E-31	IPR000242
PRINTS	PR00700	Protein tyrosine phosphatase signature	1965	1975	1.2E-31	IPR000242
PRINTS	PR00700	Protein tyrosine phosphatase signature	1916	1934	1.2E-31	IPR000242
PRINTS	PR00700	Protein tyrosine phosphatase signature	1780	1787	1.2E-31	IPR000242
MobiDBLite	mobidb-lite	consensus disorder prediction	1541	1561	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	879	895	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	595	631	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	971	1000	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	609	629	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	871	936	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	318	379	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1338	1362	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1391	1411	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1539	1673	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	337	374	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	781	813	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	843	862	-	-
Coils	Coil	Coil	382	416	-	-
Coils	Coil	Coil	470	497	-	-
Coils	Coil	Coil	866	886	-	-
Coils	Coil	Coil	512	532	-	-
Coils	Coil	Coil	435	462	-	-

Gene Ontology

Biological Process:

GO:0006470 (protein dephosphorylation) GO:0016311 (dephosphorylation)

Molecular Function:

GO:0004725 (protein tyrosine phosphatase activity) GO:0016791 (phosphatase activity)

KEGG Pathway

KO Term:

K05696 (tyrosine-protein phosphatase non-receptor type 1 [EC:3.1.3.48])

Pathway:

ko04520 (Adherens junction) map04520 (Adherens junction)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G71860.1	protein tyrosine phosphatase 1. Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.	3.18E-71
RefSeq	XP_012703424.1	protein-tyrosine-phosphatase PTP1 [Setaria italica]	9.22E-160
Swiss-Prot	O82656	Protein-tyrosine-phosphatase PTP1 OS=Arabidopsis thaliana OX=3702 GN=PTP1 PE=1 SV=1	3.07E-70
TrEMBL	A0A368S4V7	Protein-tyrosine phosphatase (Fragment) OS=Setaria italica OX=4555 GN=SETIT_8G056800v2 PE=4 SV=1	1.47E-166

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	31	AH01.2488, AH03.1644, AH04.493, AH05.2836, AH05.3040 ... AH05.86, AH06.1269, AH06.1351, AH06.1399, AH06.1416, AH06.1453, AH06.2936, AH06.701, AH07.1649, AH07.1999, AH07.2258, AH08.1185, AH09.287, BH04.2374, BH06.1094, BH08.2045, BH09.239, BH09.36, CH02.3772, CH03.2487, CH04.2472, CH05.3226, CH05.4135, CH06.1993, CH08.1341, CH09.460
Poaceae	Oryza coarctata	1	Oco08G008550