Basic Information
Locus ID:
AH04.458
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 5113618 | 5126990 | - | AH04.458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 262,279.50 Da | 42.42 | 86.14 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 900 | 1080 | 4.03763E-78 | - |
| CDD | cd09279 | RNase_HI_like | 1246 | 1370 | 6.05186E-43 | - |
| CDD | cd00303 | retropepsin_like | 684 | 761 | 3.69168E-7 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1145 | 1214 | 4.9E-14 | IPR041577 |
| Pfam | PF13456 | Reverse transcriptase-like | 1250 | 1369 | 1.0E-23 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 918 | 1071 | 2.4E-19 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 860 | 1359 | 1.67E-113 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1521 | 1627 | 4.17E-17 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1570 | 1661 | 2.3E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 1515 | 1569 | 4.4E-9 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 1090 | 1173 | 9.7E-21 | IPR043128 |
| Gene3D | G3DSA:3.10.20.370 | - | 1174 | 1228 | 1.1E-5 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 666 | 774 | 2.7E-10 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 861 | 1005 | 1.2E-58 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1244 | 1370 | 6.4E-28 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 943 | 1080 | 1.2E-58 | IPR043128 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1242 | 1371 | 12.598574 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1993 | 2007 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1969 | 2016 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1404 | 1432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1404 | 1424 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 1.2E-275 |
| Q99315 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3 | 6.96E-43 | |
| TrEMBL | Q75H36 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0027H16.6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |