Basic Information
Locus ID:
AH04.434
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40-like Beta Propeller Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 4936625 | 4939350 | - | AH04.434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 86,499.92 Da | 43.34 | 66.98 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 445 | 459 | 0.078 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 527 | 565 | 0.013 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 231 | 275 | 0.037 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 595 | 609 | 0.0022 | IPR011659 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 187 | 668 | 6.47E-34 | - |
| Gene3D | G3DSA:2.120.10.30 | - | 427 | 620 | 5.0E-20 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 621 | 768 | 2.1E-6 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 184 | 418 | 1.6E-12 | IPR011042 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 1.76E-115 |
| RefSeq | XP_052149423.1 | uncharacterized protein LOC127767970 [Oryza glaberrima] | 0 |
| TrEMBL | A0A0D3FHR4 | Protein TolB OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology