Basic Information
Locus ID:
AH04.413
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 4649080 | 4665098 | - | AH04.413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 123,556.12 Da | 50.37 | 85.31 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 166 | 258 | 1.2E-9 | IPR002182 |
| Pfam | PF05627 | Cleavage site for pathogenic type III effector avirulence factor Avr | 1042 | 1076 | 3.7E-12 | IPR008700 |
| Pfam | PF05627 | Cleavage site for pathogenic type III effector avirulence factor Avr | 984 | 1018 | 3.7E-12 | IPR008700 |
| SUPERFAMILY | SSF52058 | L domain-like | 338 | 721 | 2.62E-26 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 96 | 273 | 5.31E-19 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 517 | 726 | 7.9E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 351 | 516 | 6.6E-8 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 253 | 350 | 1.1E-8 | IPR036388 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 937 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 934 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039776144.1 | disease resistance protein RGA5-like isoform X1 [Panicum virgatum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 6.33E-200 | |
| TrEMBL | A0A3L6Q3Z7 | Putative disease resistance RPP13-like protein 2 isoform X2 OS=Panicum miliaceum OX=4540 GN=C2845_PM17G03140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology