Basic Information
Locus ID:
AH04.397
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 4354304 | 4355539 | + | AH04.397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.09 | 12,668.87 Da | 48.94 | 106.75 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 35 | 102 | 5.1E-18 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 28 | 101 | 1.23E-22 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 29 | 110 | 1.6E-21 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 114 | 16.796152 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 70 | 82 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06390.1 | GSK3/SHAGGY-like protein kinase 1. encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. | 2.13E-39 |
| RefSeq | XP_037412052.1 | shaggy-related protein kinase GSK1 [Triticum dicoccoides] | 6.83E-42 |
| Q9LWN0 | Shaggy-related protein kinase GSK1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSK1 PE=1 SV=1 | 2.24E-42 | |
| TrEMBL | A0A1E5V5L0 | Shaggy-related protein kinase eta (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0018536 PE=3 SV=1 | 3.78E-42 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg36298 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl04570, Sgl11017, Sgl21357, Sgl26687, Sgl53601, Sgl58861 |
| Apiaceae | Apium graveolens | 1 | Ag6G00064 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.844.V1.1 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20344 |
| Poaceae | Echinochloa crus-galli | 1 | AH04.397 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0545240.1 |