Basic Information
Locus ID:
AH04.2165
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
IQD27
Description:
IQ calmodulin-binding motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 42438451 | 42447061 | - | AH04.2165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 117,246.29 Da | 53.58 | 75.44 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07887 | Calmodulin binding protein-like | 170 | 308 | 2.9E-16 | IPR012416 |
| Pfam | PF07887 | Calmodulin binding protein-like | 530 | 673 | 1.8E-31 | IPR012416 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 952 | 970 | 0.0028 | IPR000048 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 973 | 990 | 0.0042 | IPR000048 |
| Gene3D | G3DSA:1.20.5.190 | - | 948 | 1013 | 7.4E-8 | - |
| SMART | SM00015 | iq_5 | 971 | 992 | 11.0 | IPR000048 |
| SMART | SM00015 | iq_5 | 948 | 970 | 0.12 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 949 | 977 | 9.5965 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 973 | 1000 | 9.5965 | IPR000048 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 887 | - | - |
| Coils | Coil | Coil | 798 | 818 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29150.1 | IQ-domain 25. | 1.19E-14 |
| RefSeq | XP_039777975.1 | uncharacterized protein LOC120645239 isoform X2 [Panicum virgatum] | 2.43E-172 |
| F4JMV6 | Protein IQ-DOMAIN 25 OS=Arabidopsis thaliana OX=3702 GN=IQD25 PE=1 SV=1 | 1.18E-13 | |
| TrEMBL | A0A8T0PT30 | NAC domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG251930 PE=4 SV=1 | 2.77E-171 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.2165, CH04.2588, CH06.2103 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0306700.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_058377, gene-QYE76_058984, gene-QYE76_058985 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G255700, gene-BS78_05G255800 |
| Poaceae | Thinopyrum elongatum | 7 | Tel3E01G641200, Tel3E01G641300, Tel3E01G896700 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3BG086480, gene_TRIDC3BG086490 |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G403500.1, TraesCS3B02G600600.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-45984, nbis-gene-45985 |