Basic Information
Locus ID:
AH04.216
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 2341542 | 2350653 | - | AH04.216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 202,074.16 Da | 40.26 | 78.57 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 1086 | 1266 | 1.77911E-79 | - |
| CDD | cd00303 | retropepsin_like | 844 | 926 | 1.89347E-7 | - |
| CDD | cd07067 | HP_PGM_like | 1611 | 1770 | 1.62917E-15 | IPR013078 |
| CDD | cd09279 | RNase_HI_like | 1474 | 1551 | 2.88574E-24 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1104 | 1266 | 2.0E-21 | IPR000477 |
| Pfam | PF00300 | Histidine phosphatase superfamily (branch 1) | 1611 | 1772 | 1.2E-32 | IPR013078 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1331 | 1403 | 6.0E-16 | IPR041577 |
| Pfam | PF13456 | Reverse transcriptase-like | 1483 | 1551 | 3.8E-10 | IPR002156 |
| SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 1612 | 1778 | 4.28E-32 | IPR029033 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1046 | 1440 | 5.6E-111 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1473 | 1552 | 6.2E-11 | IPR012337 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 825 | 930 | 2.6E-10 | IPR021109 |
| Gene3D | G3DSA:3.10.20.370 | - | 1360 | 1417 | 6.1E-6 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1047 | 1191 | 1.0E-60 | - |
| Gene3D | G3DSA:3.40.50.1240 | - | 1604 | 1780 | 5.7E-37 | IPR029033 |
| Gene3D | G3DSA:3.30.70.270 | - | 1276 | 1359 | 4.1E-20 | IPR043128 |
| Gene3D | G3DSA:3.30.420.10 | - | 1472 | 1602 | 2.1E-8 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 1129 | 1266 | 1.0E-60 | IPR043128 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1476 | 1597 | 10.37935 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 700 | - | - |
| Coils | Coil | Coil | 685 | 705 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50520.1 | Phosphoglycerate mutase family protein. | 1.21E-48 |
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 9.99E-247 |
| Q9SCS3 | Phosphoglycerate mutase-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=At3g50520 PE=2 SV=1 | 1.17E-47 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |