Basic Information
Locus ID:
AH04.2001
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 40092888 | 40097714 | - | AH04.2001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 47,890.01 Da | 46.40 | 67.69 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 276 | 350 | 1.59352E-31 | - |
| CDD | cd12619 | RRM2_PUB1 | 158 | 232 | 4.65249E-47 | - |
| CDD | cd12352 | RRM1_TIA1_like | 74 | 144 | 4.60076E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 74 | 140 | 2.5E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 278 | 344 | 8.2E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 229 | 2.0E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 71 | 234 | 1.29E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 266 | 360 | 6.11E-24 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 156 | 234 | 2.1E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 235 | 357 | 4.6E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 155 | 1.7E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 73 | 142 | 4.1E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 277 | 346 | 2.2E-19 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 158 | 231 | 9.4E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 276 | 350 | 16.755964 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 72 | 146 | 15.630307 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 235 | 17.932785 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 272 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 2.94E-181 |
| RefSeq | XP_039822338.1 | oligouridylate-binding protein 1-like [Panicum virgatum] | 5.1E-256 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 2.82E-180 | |
| TrEMBL | A0A8T0PF62 | Oligouridylate binding protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG338800 PE=4 SV=1 | 1.15E-254 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology