halophFGD

Basic Information

Locus ID: AH04.1949

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH04	39144016	39150576	-	AH04.1949

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.17	81,882.81 Da	54.00	82.13	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12894	Anaphase-promoting complex subunit 4 WD40 domain	157	235	3.3E-5	IPR024977
Pfam	PF13968	Domain of unknown function (DUF4220)	573	754	4.0E-36	IPR025315
SUPERFAMILY	SSF50978	WD40 repeat-like	95	359	2.38E-29	IPR036322
Gene3D	G3DSA:2.130.10.10	-	7	359	7.2E-58	IPR015943
SMART	SM00320	WD40_4	181	219	59.0	IPR001680
SMART	SM00320	WD40_4	139	177	0.13	IPR001680
SMART	SM00320	WD40_4	271	310	16.0	IPR001680
SMART	SM00320	WD40_4	84	122	260.0	IPR001680
SMART	SM00320	WD40_4	314	353	0.027	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	398	488	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	30	59	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	411	454	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14003 (prolactin regulatory element-binding protein)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G50550.1	Transducin/WD40 repeat-like superfamily protein.	1.17E-80
RefSeq	XP_039822374.1	SEC12-like protein 2 isoform X2 [Panicum virgatum]	3.89E-203
Swiss-Prot	Q39221	SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4	3.22E-77
TrEMBL	A0A8T0PXF4	ANAPC4_WD40 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG324032 PE=4 SV=1	1.24E-200

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14511, jg7330
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23132, gene_604
Amaranthaceae	Atriplex hortensis	4	Ah012450, Ah012451, Ah016321, Ah023382
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg29069, Sbi_jg3290, Sbi_jg40588, Sbi_jg50615
Amaranthaceae	Salicornia europaea	2	Seu_jg2171, Seu_jg6645
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000104, GOSA_00016038
Amaranthaceae	Suaeda glauca	9	Sgl11480, Sgl13206, Sgl16880, Sgl18419, Sgl33801, Sgl34290 ... Sgl39692, Sgl45088, Sgl49856
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010681, gene:ENSEOMG00000013497 ... gene:ENSEOMG00000033031, gene:ENSEOMG00000034857, gene:ENSEOMG00000047014, gene:ENSEOMG00000049291
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0008180, CQ.Regalona.r1.2BG0021230 ... CQ.Regalona.r1.8AG0009650, CQ.Regalona.r1.8BG0010650
Anacardiaceae	Pistacia vera	3	pistato.v30170310, pistato.v30205970, pistato.v30217290
Apiaceae	Apium graveolens	3	Ag11G04559, Ag1G01641, Ag6G00567
Arecaceae	Cocos nucifera	3	COCNU_03G007440, COCNU_06G013280, scaffold004036G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103701794, gene-LOC103710165, gene-LOC103710997 ... gene-LOC103712026, gene-LOC120111993
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.1665.V1.1, AsparagusV1_03.1984.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G03945, Ftri17G03727
Brassicaceae	Arabidopsis thaliana	4	AT2G01470.1, AT3G52190.1, AT5G50550.1, AT5G50650.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000916m.g.v1.0, Thhalv10010438m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g12920.v2.2, Sp5g10080.v2.2
Brassicaceae	Brassica nigra	6	BniB02g021150.2N, BniB02g064740.2N, BniB04g009690.2N ... BniB06g033220.2N, BniB06g066630.2N, BniB08g066470.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G0893
Casuarinaceae	Casuarina glauca	2	Cgl05G1173, Cgl09G0965
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g02000, gene.Cymno16g04280
Dunaliellaceae	Dunaliella salina	1	Dusal.1031s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g41720, gene.Thate04g20540
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6792
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.1159, evm.TU.LG03.1371, evm.TU.LG11.410
Plantaginaceae	Plantago ovata	2	Pov_00010686, Pov_00019071
Plumbaginaceae	Limonium bicolor	4	Lb1G05334, Lb2G12329, Lb3G21233, Lb3G21235
Poaceae	Echinochloa crus-galli	10	AH01.237, AH03.460, AH04.1949, AH08.2314, BH01.499, BH03.562 ... BH04.1965, CH01.362, CH03.642, CH04.2316
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0212220, gene-QOZ80_3BG0257430 ... gene-QOZ80_7AG0558790, gene-QOZ80_7BG0589990, gene-QOZ80_9AG0688770, gene-QOZ80_9BG0716380
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.4HG0365400.1, HORVU.MOREX.r3.5HG0520330.1 ... HORVU.MOREX.r3.5HG0520500.1, HORVU.MOREX.r3.7HG0733200.1
Poaceae	Lolium multiflorum	5	gene-QYE76_016826, gene-QYE76_042088, gene-QYE76_042897 ... gene-QYE76_061149, gene-QYE76_066049
Poaceae	Oryza coarctata	4	Oco13G002930, Oco14G003210, Oco21G008420, Oco22G009650
Poaceae	Oryza sativa	3	LOC_Os03g58570.1, LOC_Os07g09000.1, LOC_Os11g39650.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G048600, gene-BS78_02G062100 ... gene-BS78_05G207900
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0105428, Pt_Chr0105507, Pt_Chr0105508, Pt_Chr0107634 ... Pt_Chr0303750, Pt_Chr0704448
Poaceae	Sporobolus alterniflorus	8	Chr01G002610, Chr07G015190, Chr12G034460, Chr16G004780 ... Chr17G004270, Chr19G016900, Chr28G002260, Chr31G007620
Poaceae	Thinopyrum elongatum	4	Tel4E01G241400, Tel5E01G699000, Tel7E01G766000 ... Tel7E01G788800
Poaceae	Triticum dicoccoides	8	gene_TRIDC4AG025750, gene_TRIDC4BG025860 ... gene_TRIDC5AG063980, gene_TRIDC5BG068630, gene_TRIDC7AG063020, gene_TRIDC7AG065110, gene_TRIDC7BG056610, gene_TRIDC7BG058620
Poaceae	Triticum aestivum	12	TraesCS4A02G163600.1, TraesCS4B02G166000.1 ... TraesCS4D02G152300.1, TraesCS5A02G446800.1, TraesCS5B02G450700.1, TraesCS5D02G453600.2, TraesCS7A02G454100.1, TraesCS7A02G466100.1, TraesCS7B02G354500.1, TraesCS7B02G367500.1, TraesCS7D02G443200.1, TraesCS7D02G453800.2
Poaceae	Zea mays	6	Zm00001eb061140_P001, Zm00001eb115120_P003 ... Zm00001eb166990_P002, Zm00001eb228390_P001, Zm00001eb302280_P001, Zm00001eb411370_P001
Poaceae	Zoysia japonica	4	nbis-gene-15373, nbis-gene-26765, nbis-gene-43138 ... nbis-gene-46114
Poaceae	Zoysia macrostachya	4	Zma_g18187, Zma_g19051, Zma_g271, Zma_g6120
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.825, evm.TU.LG19.497, evm.TU.LG23.183 ... evm.TU.LG24.589
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g22540, gene.Posoc03g03950
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_17_RagTag.815, evm.TU.Scaffold_4_RagTag.1557
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-23527, nbisL1-mrna-26184, nbisL1-mrna-26411
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-16834, nbisL1-mrna-20934, nbisL1-mrna-4092
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-17513, nbisL1-mrna-22026, nbisL1-mrna-4383
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.120, evm.TU.utg000008l.846 ... evm.TU.utg000013l.457
Rhizophoraceae	Kandelia obovata	3	Maker00001200, Maker00004317, Maker00004640
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10850, nbisL1-mrna-11606, nbisL1-mrna-2206
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14225, nbisL1-mrna-2749, nbisL1-mrna-9608
Salicaceae	Populus euphratica	4	populus_peu06176, populus_peu07169, populus_peu20019 ... populus_peu21162
Solanaceae	Lycium barbarum	4	gene-LOC132614281, gene-LOC132614546, gene-LOC132618634 ... gene-LOC132640612
Solanaceae	Solanum chilense	2	SOLCI001406800, SOLCI002649400
Solanaceae	Solanum pennellii	2	gene-LOC107003056, gene-LOC107024030
Tamaricaceae	Reaumuria soongarica	3	STRG.19713_chr07_+, STRG.32413_chr09_-, gene_17278
Tamaricaceae	Tamarix chinensis	2	TC02G1067, TC04G1282
Zosteraceae	Zostera marina	4	Zosma04g11130.v3.1, Zosma05g15150.v3.1, Zosma05g32500.v3.1 ... Zosma06g23600.v3.1