Basic Information
Locus ID:
AH04.1926
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD-40 repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 38858517 | 38862399 | - | AH04.1926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 45,684.00 Da | 47.44 | 87.25 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 293 | 2.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 249 | 318 | 1.41E-11 | IPR036322 |
| SUPERFAMILY | SSF50952 | Soluble quinoprotein glucose dehydrogenase | 95 | 304 | 1.24E-7 | IPR011041 |
| Gene3D | G3DSA:2.130.10.10 | - | 234 | 351 | 4.1E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 254 | 293 | 3.1E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 261 | 302 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 261 | 296 | 11.365591 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 280 | 294 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 84 | - | - |
| Coils | Coil | Coil | 363 | 390 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002968343.1 | suppressor of mec-8 and unc-52 protein homolog 1 [Selaginella moellendorffii] | 5.69E-16 |
| TrEMBL | A0A3L6FJZ6 | WD40 repeat-containing protein SMU1 OS=Zea mays OX=4577 GN=SMU1 PE=3 SV=1 | 3.05E-29 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0005210, CQ.Regalona.r1.8BG0007010 |
| Poaceae | Echinochloa crus-galli | 1 | AH04.1926 |