Basic Information
Locus ID:
AH04.1891
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 38283184 | 38290268 | + | AH04.1891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 76,423.26 Da | 41.30 | 87.44 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02989 | Phd_like_TxnDC9 | 536 | 646 | 5.46165E-58 | - |
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 30 | 78 | 9.5358E-18 | - |
| Pfam | PF12906 | RING-variant domain | 30 | 77 | 1.2E-10 | IPR011016 |
| Pfam | PF00085 | Thioredoxin | 544 | 628 | 3.3E-5 | IPR013766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 82 | 5.12E-14 | - |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 495 | 654 | 1.42E-36 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 532 | 665 | 9.3E-33 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 83 | 1.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 29 | 78 | 1.0E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 22 | 84 | 20.253637 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 348 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 8.15E-193 |
| RefSeq | XP_004979655.1 | uncharacterized protein LOC101768225 [Setaria italica] | 3.12E-229 |
| Q8LCV1 | Thioredoxin domain-containing protein PLP3B OS=Arabidopsis thaliana OX=3702 GN=PLP3B PE=2 SV=1 | 6.1E-89 | |
| TrEMBL | A0A5J9UKU9 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_26868 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology