Basic Information
Locus ID:
AH04.1885
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 38168175 | 38174351 | - | AH04.1885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 100,852.52 Da | 56.58 | 81.72 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 731 | 842 | 1.88E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 573 | 618 | 2.22E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 214 | 426 | 1.1E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 67 | 5.63E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 23 | 80 | 2.9E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 572 | 624 | 1.5E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 661 | 875 | 1.5E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 117 | 451 | 3.1E-10 | IPR032675 |
| SMART | SM00256 | fbox_2 | 579 | 618 | 4.9 | IPR001810 |
| SMART | SM00256 | fbox_2 | 29 | 68 | 0.85 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78760.1 | F-box/RNI-like superfamily protein. | 6.53E-8 |
| RefSeq | XP_034607272.1 | MEIOTIC F-BOX protein MOF-like [Setaria viridis] | 7.28E-179 |
| Q7X7A4 | MEIOTIC F-BOX protein MOF OS=Oryza sativa subsp. japonica OX=39947 GN=MOF PE=1 SV=2 | 3.6E-14 | |
| TrEMBL | A0A811Q960 | F-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS36883 PE=4 SV=1 | 8.14E-253 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology